Overview | Data | Empirical bivariate transition counts | Global bivariate case | Local pattern identification for a complete case | Repeating the analysis from each perspective | Reading the global and local steps together | References

Purpose of the package | Real-world use cases | Data structure | Estimation and identification | Exported functions | Assumptions and current scope | Relationship to the workflow vignettes | References

Overview | Data | Univariate worked example | Bivariate worked example | Sequence-length sensitivity results | Interpretation | References

Overview | Data | Empirical transition counts | Maximum-likelihood transition probabilities | Univariate pattern identification | Interpretation | References